PoplarV1, Main, Exploration, bibRecord, 002F50

Comparative genome mapping among Populus adenopoda, P. alba, P. deltoides, P. euramericana and P. trichocarpa.

Identifieur interne : 002F50 ( Main/Exploration ); précédent : 002F49; suivant : 002F51

Comparative genome mapping among Populus adenopoda, P. alba, P. deltoides, P. euramericana and P. trichocarpa.

Auteurs : Yuanxiu Wang [Japon] ; Bo Zhang ; Xiaoyan Sun ; Biyue Tan ; Li-An Xu ; Minren Huang ; Mingxiu Wang

Source :

Genes & genetic systems [ 1880-5779 ] ; 2011.

RBID : pubmed:22214594

Descripteurs français

English descriptors

KwdEn :
- Chromosome Duplication (MeSH), Chromosomes, Plant (genetics), Comparative Genomic Hybridization (methods), Genetic Markers (MeSH), Genome, Plant (MeSH), Genotype (MeSH), Microsatellite Repeats (MeSH), Physical Chromosome Mapping (MeSH), Populus (classification), Populus (genetics), Species Specificity (MeSH), Synteny (MeSH).
MESH :
- chemical : Genetic Markers.
- classification : Populus.
- genetics : Chromosomes, Plant, Populus.
- methods : Comparative Genomic Hybridization.
- Chromosome Duplication, Genome, Plant, Genotype, Microsatellite Repeats, Physical Chromosome Mapping, Species Specificity, Synteny.

Abstract

Among the genus Populus, the sections Populus (white poplar), Aigeiros Duby (black poplar) and Tacamahaca Spach contain many tree species of economical and ecological important properties. Two parental maps for the inter-specific hybrid population of Populus adenopoda × P. alba (two species of Populus section) were constructed based on SSR and SRAP markers by means of a two-way pseudo-test cross mapping strategy. The same set of SSR markers developed from the P. trichocarpa (belonging to Tacamahaca section) genome which were used to construct the maps of P. deltoides and P. euramericana (two species of Aigeiros section) was chosen to analyze the genotype of the experimental population of P. adenopoda × P. alba. Using the mapped SSR markers as allelic bridges, the alignment of the white and black poplar maps to each other and to the P. trichocarpa physical map was conducted. The alignment showed high degree of marker synteny and colinearity and the closer relationship between Aigeiros and Tacamahaca sections than that of Populus and Tacamahaca. Moreover, there was evidence for the chromosomal duplication and inter-chromosomal reorganization involving some poplar linkage groups, suggesting a complicated course of fission or fusion in one of the lineages. A poplar consensus map based on the comparisons could be constructed will be useful in practical applications including marker assisted selection.

DOI: 10.1266/ggs.86.257
PubMed: 22214594

Affiliations:

Japon

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Le document en format XML

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<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Forest Genetics & Biotechnology (Nanjing Forestry University), Japan. wangyx@mail.ahun.edu.cn</nlm:affiliation>
<country xml:lang="fr">Japon</country>
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<author><name sortKey="Zhang, Bo" sort="Zhang, Bo" uniqKey="Zhang B" first="Bo" last="Zhang">Bo Zhang</name>
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<author><name sortKey="Sun, Xiaoyan" sort="Sun, Xiaoyan" uniqKey="Sun X" first="Xiaoyan" last="Sun">Xiaoyan Sun</name>
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<author><name sortKey="Tan, Biyue" sort="Tan, Biyue" uniqKey="Tan B" first="Biyue" last="Tan">Biyue Tan</name>
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<author><name sortKey="Xu, Li An" sort="Xu, Li An" uniqKey="Xu L" first="Li-An" last="Xu">Li-An Xu</name>
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<author><name sortKey="Huang, Minren" sort="Huang, Minren" uniqKey="Huang M" first="Minren" last="Huang">Minren Huang</name>
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<term>Comparative Genomic Hybridization (methods)</term>
<term>Genetic Markers (MeSH)</term>
<term>Genome, Plant (MeSH)</term>
<term>Genotype (MeSH)</term>
<term>Microsatellite Repeats (MeSH)</term>
<term>Physical Chromosome Mapping (MeSH)</term>
<term>Populus (classification)</term>
<term>Populus (genetics)</term>
<term>Species Specificity (MeSH)</term>
<term>Synteny (MeSH)</term>
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<keywords scheme="KwdFr" xml:lang="fr"><term>Cartographie physique de chromosome (MeSH)</term>
<term>Chromosomes de plante (génétique)</term>
<term>Duplication chromosomique (MeSH)</term>
<term>Génome végétal (MeSH)</term>
<term>Génotype (MeSH)</term>
<term>Hybridation génomique comparative (méthodes)</term>
<term>Marqueurs génétiques (MeSH)</term>
<term>Populus (classification)</term>
<term>Populus (génétique)</term>
<term>Répétitions microsatellites (MeSH)</term>
<term>Spécificité d'espèce (MeSH)</term>
<term>Synténie (MeSH)</term>
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<term>Microsatellite Repeats</term>
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<term>Synteny</term>
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<term>Marqueurs génétiques</term>
<term>Populus</term>
<term>Répétitions microsatellites</term>
<term>Spécificité d'espèce</term>
<term>Synténie</term>
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<front><div type="abstract" xml:lang="en">Among the genus Populus, the sections Populus (white poplar), Aigeiros Duby (black poplar) and Tacamahaca Spach contain many tree species of economical and ecological important properties. Two parental maps for the inter-specific hybrid population of Populus adenopoda × P. alba (two species of Populus section) were constructed based on SSR and SRAP markers by means of a two-way pseudo-test cross mapping strategy. The same set of SSR markers developed from the P. trichocarpa (belonging to Tacamahaca section) genome which were used to construct the maps of P. deltoides and P. euramericana (two species of Aigeiros section) was chosen to analyze the genotype of the experimental population of P. adenopoda × P. alba. Using the mapped SSR markers as allelic bridges, the alignment of the white and black poplar maps to each other and to the P. trichocarpa physical map was conducted. The alignment showed high degree of marker synteny and colinearity and the closer relationship between Aigeiros and Tacamahaca sections than that of Populus and Tacamahaca. Moreover, there was evidence for the chromosomal duplication and inter-chromosomal reorganization involving some poplar linkage groups, suggesting a complicated course of fission or fusion in one of the lineages. A poplar consensus map based on the comparisons could be constructed will be useful in practical applications including marker assisted selection.</div>
</front>
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<Month>04</Month>
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<Abstract><AbstractText>Among the genus Populus, the sections Populus (white poplar), Aigeiros Duby (black poplar) and Tacamahaca Spach contain many tree species of economical and ecological important properties. Two parental maps for the inter-specific hybrid population of Populus adenopoda × P. alba (two species of Populus section) were constructed based on SSR and SRAP markers by means of a two-way pseudo-test cross mapping strategy. The same set of SSR markers developed from the P. trichocarpa (belonging to Tacamahaca section) genome which were used to construct the maps of P. deltoides and P. euramericana (two species of Aigeiros section) was chosen to analyze the genotype of the experimental population of P. adenopoda × P. alba. Using the mapped SSR markers as allelic bridges, the alignment of the white and black poplar maps to each other and to the P. trichocarpa physical map was conducted. The alignment showed high degree of marker synteny and colinearity and the closer relationship between Aigeiros and Tacamahaca sections than that of Populus and Tacamahaca. Moreover, there was evidence for the chromosomal duplication and inter-chromosomal reorganization involving some poplar linkage groups, suggesting a complicated course of fission or fusion in one of the lineages. A poplar consensus map based on the comparisons could be constructed will be useful in practical applications including marker assisted selection.</AbstractText>
</Abstract>
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Comparative genome mapping among Populus adenopoda, P. alba, P. deltoides, P. euramericana and P. trichocarpa.

Comparative genome mapping among Populus adenopoda, P. alba, P. deltoides, P. euramericana and P. trichocarpa.

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki